Index

A

abs_energy() (astrocast.reduction.FeatureExtraction method) abs_sum() (astrocast.reduction.FeatureExtraction method) add_clustering() (astrocast.analysis.Events method), [1] align() (astrocast.preparation.XII static method) align_events_and_incidences() (astrocast.clustering.CoincidenceDetection method) all_features() (astrocast.reduction.FeatureExtraction method) Analysis (class in astrocast.app_analysis) annealed_loss() (astrocast.denoising.Network static method), [1] are_equal_tensors() (astrocast.autoencoders.TimeSeriesRnnAE static method) astrocast module astrocast.analysis module astrocast.app_analysis module astrocast.app_preparation module

astrocast.autoencoders module astrocast.cli_interfaces module astrocast.clustering module astrocast.denoising module astrocast.detection module astrocast.helper module astrocast.preparation module astrocast.reduction module

C

CachedClass (class in astrocast.helper) calculate_barycenters() (astrocast.clustering.Linkage method) calculate_linkage_matrix() (astrocast.clustering.Linkage method) characterize_event() (astrocast.detection.Detector method), [1] check_output() (in module astrocast.cli_interfaces) cid_ce() (astrocast.reduction.FeatureExtraction method) cleanup_mmap() (astrocast.detection.Detector static method), [1] cluster_linkage_matrix() (astrocast.clustering.Linkage static method) ClusterTree (class in astrocast.reduction) CNN_Autoencoder (class in astrocast.autoencoders)

CoincidenceDetection (class in astrocast.clustering) collate_fn() (astrocast.autoencoders.PaddedDataLoader static method) copy() (astrocast.analysis.Events method), [1] create_dataset() (astrocast.helper.EventSim method) create_event_map() (astrocast.analysis.Events static method), [1] create_graph() (astrocast.clustering.Modules method) create_lookup_table() (astrocast.analysis.Events method), [1] create_random_blob() (astrocast.helper.EventSim static method) create_ui() (astrocast.app_analysis.Analysis method) (astrocast.app_preparation.Explorer method) CustomUpsample (class in astrocast.autoencoders)

D

Decoder (class in astrocast.autoencoders) define_layers() (astrocast.autoencoders.CNN_Autoencoder static method) Delta (class in astrocast.preparation), [1] Detector (class in astrocast.detection), [1] detrend() (astrocast.preparation.XII method) diff() (astrocast.helper.Normalization static method)

Discriminator (class in astrocast.clustering) Distance (class in astrocast.clustering) divide() (astrocast.helper.Normalization method) download_pretrained_models() (in module astrocast.helper) download_sample_data() (in module astrocast.helper) DummyGenerator (class in astrocast.helper)

E

early_stop() (astrocast.autoencoders.EarlyStopper method) EarlyStopper (class in astrocast.autoencoders) embed() (astrocast.autoencoders.CNN_Autoencoder method) (astrocast.reduction.UMAP method) embedd() (astrocast.autoencoders.TimeSeriesRnnAE method) emg_var() (astrocast.reduction.FeatureExtraction method) Encoder (class in astrocast.autoencoders) end() (astrocast.cli_interfaces.UserFeedback method)

enforce_length() (astrocast.analysis.Events method), [1] eval() (astrocast.autoencoders.TimeSeriesRnnAE method) evaluate() (astrocast.clustering.Discriminator method) evaluate_batch() (astrocast.autoencoders.TimeSeriesRnnAE method) Events (class in astrocast.analysis), [1] EventSim (class in astrocast.helper) exists_and_clean() (astrocast.preparation.IO static method) experimental() (in module astrocast.helper) Explorer (class in astrocast.app_preparation)

F

FeatureExtraction (class in astrocast.reduction) filter() (astrocast.analysis.Events method), [1] fit() (astrocast.clustering.HdbScan method) (astrocast.clustering.KMeansClustering method)

forward() (astrocast.autoencoders.CNN_Autoencoder method) (astrocast.autoencoders.CustomUpsample method) (astrocast.autoencoders.Decoder method) (astrocast.autoencoders.Encoder method) (astrocast.autoencoders.GaussianNoise method)

G

GaussianNoise (class in astrocast.autoencoders) get_array() (astrocast.helper.DummyGenerator method) get_available_models() (astrocast.clustering.Discriminator static method) get_average_event_trace() (astrocast.analysis.Events method) get_barycenters() (astrocast.clustering.Linkage method) get_by_name() (astrocast.helper.DummyGenerator method) get_camera_timing() (astrocast.preparation.XII method) get_correlation() (astrocast.clustering.Distance method) get_count() (astrocast.reduction.ClusterTree method) get_counts_per_cluster() (astrocast.analysis.Events method), [1] get_dask() (astrocast.helper.DummyGenerator method) get_data() (astrocast.analysis.Video method) (astrocast.helper.DummyGenerator static method) get_data_dimensions() (in module astrocast.helper) get_dataframe() (astrocast.helper.DummyGenerator method) get_dataloader() (astrocast.autoencoders.PaddedDataLoader method) get_datasets() (astrocast.autoencoders.PaddedDataLoader method) get_dir() (astrocast.helper.SampleInput method) get_dtw_correlation() (astrocast.clustering.Distance method)

get_event_map() (astrocast.analysis.Events static method), [1] get_events() (astrocast.helper.DummyGenerator method) get_extended_events() (astrocast.analysis.Events method) get_frequency() (astrocast.analysis.Events method) get_image_project() (astrocast.analysis.Video method) get_leaves() (astrocast.reduction.ClusterTree method) get_list() (astrocast.helper.DummyGenerator method) get_loc() (astrocast.helper.SampleInput method) get_node() (astrocast.reduction.ClusterTree method) get_pearson_correlation() (astrocast.clustering.Distance method) get_summary_statistics() (astrocast.analysis.Events method) get_table_excl() (astrocast.app_analysis.Analysis method) get_table_rounded() (astrocast.app_analysis.Analysis method) get_test_data() (astrocast.helper.SampleInput method) get_time_map() (astrocast.analysis.Events method) get_trials() (astrocast.analysis.Events method) get_two_step_barycenters() (astrocast.clustering.Linkage method) get_value() (astrocast.helper.Normalization static method) gmean() (astrocast.reduction.FeatureExtraction method)

H

HdbScan (class in astrocast.clustering)

hmean() (astrocast.reduction.FeatureExtraction method)

I

impute_nan() (astrocast.helper.Normalization static method) infer() (astrocast.denoising.SubFrameGenerator method), [1] infer_chunks() (astrocast.preparation.IO static method) infer_chunks_from_array() (astrocast.preparation.IO method) init_hidden() (astrocast.autoencoders.Encoder method)

Input (class in astrocast.preparation), [1] IO (class in astrocast.preparation) is_docker() (in module astrocast.helper) is_leaf() (astrocast.reduction.ClusterTree method) is_ragged() (in module astrocast.helper)

K

KMeansClustering (class in astrocast.clustering)

kurt() (astrocast.reduction.FeatureExtraction method)

L

large_standard_deviation() (astrocast.reduction.FeatureExtraction method) Linkage (class in astrocast.clustering) load() (astrocast.autoencoders.CNN_Autoencoder class method) (astrocast.clustering.HdbScan method) (astrocast.preparation.IO method) (astrocast.reduction.UMAP method)

load_models() (astrocast.autoencoders.TimeSeriesRnnAE method) load_xii() (astrocast.preparation.XII static method) load_yaml_defaults() (in module astrocast.helper) longest_strike_above_mean() (astrocast.reduction.FeatureExtraction method) longest_strike_below_mean() (astrocast.reduction.FeatureExtraction method)

M

maximum() (astrocast.reduction.FeatureExtraction method) mean() (astrocast.reduction.FeatureExtraction method) mean_abs() (astrocast.reduction.FeatureExtraction method) mean_crossings() (astrocast.reduction.FeatureExtraction method) mean_diff() (astrocast.reduction.FeatureExtraction method) mean_squareroot_error() (astrocast.denoising.Network static method), [1] mean_std() (astrocast.helper.Normalization method) means_abs_diff() (astrocast.reduction.FeatureExtraction method) median() (astrocast.reduction.FeatureExtraction method) median_absolute_deviation() (astrocast.reduction.FeatureExtraction method) min_max() (astrocast.helper.Normalization method) minimum() (astrocast.reduction.FeatureExtraction method) module astrocast astrocast.analysis astrocast.app_analysis astrocast.app_preparation astrocast.autoencoders astrocast.cli_interfaces astrocast.clustering astrocast.denoising astrocast.detection astrocast.helper astrocast.preparation astrocast.reduction

Modules (class in astrocast.clustering) MotionCorrection (class in astrocast.preparation), [1] mse() (astrocast.reduction.FeatureExtraction method)

N

Network (class in astrocast.denoising), [1]

Normalization (class in astrocast.helper) normalize() (astrocast.analysis.Events method), [1]

O

on_epoch_end() (astrocast.denoising.SubFrameGenerator method), [1]

P

PaddedDataLoader (class in astrocast.autoencoders) PaddedSequenceDataset (class in astrocast.autoencoders) parse_chunks() (in module astrocast.cli_interfaces) percentage_of_reoccurring_datapoints_to_all_datapoints() (astrocast.reduction.FeatureExtraction method) plot() (astrocast.reduction.UMAP method) plot_cluster_counts() (astrocast.analysis.Events method), [1] plot_cluster_fraction_of_retention() (astrocast.clustering.Linkage static method) plot_compare_correlated_events() (astrocast.clustering.Distance method) plot_correlation_characteristics() (astrocast.clustering.Distance method) plot_distribution() (astrocast.analysis.Plotting method) plot_examples_pytorch() (astrocast.autoencoders.CNN_Autoencoder method)

plot_images() (astrocast.app_analysis.Analysis method) (astrocast.app_preparation.Explorer method) plot_overview() (astrocast.analysis.Video method) plot_traces() (astrocast.analysis.Plotting method) (astrocast.autoencoders.TimeSeriesRnnAE method) Plotting (class in astrocast.analysis) predict() (astrocast.clustering.Discriminator method) (astrocast.clustering.HdbScan method) predict_coincidence() (astrocast.clustering.CoincidenceDetection method) predict_incidence_location() (astrocast.clustering.CoincidenceDetection method) print_cache_path() (astrocast.helper.CachedClass method)

R

reshape_to_square_matrix() (astrocast.autoencoders.CNN_Autoencoder static method) retrain_model() (astrocast.denoising.Network method), [1] root_mean_square() (astrocast.reduction.FeatureExtraction method) run() (astrocast.app_analysis.Analysis method) (astrocast.app_preparation.Explorer method) (astrocast.denoising.Network method), [1] (astrocast.detection.Detector method), [1] (astrocast.helper.Normalization method) (astrocast.preparation.Delta method), [1] (astrocast.preparation.Input method), [1] (astrocast.preparation.MotionCorrection method), [1]

S

SampleInput (class in astrocast.helper) save() (astrocast.autoencoders.CNN_Autoencoder method) (astrocast.clustering.HdbScan method) (astrocast.preparation.Delta method), [1] (astrocast.preparation.IO method) (astrocast.preparation.MotionCorrection method), [1] (astrocast.reduction.UMAP method) save_models() (astrocast.autoencoders.TimeSeriesRnnAE method) search() (astrocast.reduction.ClusterTree method) server() (astrocast.app_analysis.Analysis method) (astrocast.app_preparation.Explorer method) set_learning_rates() (astrocast.autoencoders.TimeSeriesRnnAE method) shannon_entropy() (astrocast.reduction.FeatureExtraction method) show() (astrocast.analysis.Video method) (astrocast.preparation.XII method)

show_event_map() (astrocast.analysis.Events method), [1] simulate() (astrocast.helper.EventSim method) skew() (astrocast.reduction.FeatureExtraction method) slope_sign_changes() (astrocast.reduction.FeatureExtraction method) sort_alpha_numerical_names() (astrocast.preparation.IO static method) split_3d_array_indices() (astrocast.helper.EventSim static method) split_dataset() (astrocast.autoencoders.CNN_Autoencoder static method) (astrocast.clustering.Discriminator method) start() (astrocast.cli_interfaces.UserFeedback method) std() (astrocast.reduction.FeatureExtraction method) SubFrameGenerator (class in astrocast.denoising), [1] subtract() (astrocast.helper.Normalization method) summarize_modules() (astrocast.clustering.Modules method) symmetry_looking() (astrocast.reduction.FeatureExtraction method)

T

TimeSeriesRnnAE (class in astrocast.autoencoders) to_numpy() (astrocast.analysis.Events method), [1] to_tsfresh() (astrocast.analysis.Events method), [1] train() (astrocast.autoencoders.TimeSeriesRnnAE method) (astrocast.reduction.UMAP method) train_autoencoder() (astrocast.autoencoders.CNN_Autoencoder method) train_batch() (astrocast.autoencoders.TimeSeriesRnnAE method)

train_classifier() (astrocast.clustering.Discriminator method) train_epochs() (astrocast.autoencoders.TimeSeriesRnnAE method) training (astrocast.autoencoders.CNN_Autoencoder attribute) (astrocast.autoencoders.CustomUpsample attribute) (astrocast.autoencoders.Decoder attribute) (astrocast.autoencoders.Encoder attribute) (astrocast.autoencoders.GaussianNoise attribute)

U

UMAP (class in astrocast.reduction) update_learning_rates() (astrocast.autoencoders.TimeSeriesRnnAE method)

update_nested_dict() (astrocast.app_analysis.Analysis method) UserFeedback (class in astrocast.cli_interfaces)

V

var() (astrocast.reduction.FeatureExtraction method) variance_larger_than_standard_deviation() (astrocast.reduction.FeatureExtraction method) variation() (astrocast.reduction.FeatureExtraction method)

vec_sum() (astrocast.reduction.FeatureExtraction method) Video (class in astrocast.analysis) visualize_h5_recursive() (in module astrocast.cli_interfaces)

W

waveform_length() (astrocast.reduction.FeatureExtraction method)

willison_amplitude() (astrocast.reduction.FeatureExtraction method) wrapper_local_cache() (in module astrocast.helper)

X

XII (class in astrocast.preparation)

Z

zero_crossing() (astrocast.reduction.FeatureExtraction method)